منابع مشابه
Pharmacophore annotation using extended Hückel theory
Pharmacophore models play an essential role in drug discovery. Generating pharmacophore models which encode accurate molecular recognition features are highly dependent on properly defined annotations. Simplistic or ill-defined pharmacophore annotations which do not capture subtle electronic or geometric effects lead to many inaccuracies. SMARTS patterns which are often used to specify annotati...
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In this second paper, we develop transferable semiempirical extended Hückel theoretical EHT parameters for the electronic structure of another technologically important material, namely, silicon. The EHT parameters are optimized to experimental target values of the band dispersion of bulk silicon. We quantitatively benchmark our parameters to bulk electronic properties such as band edge energie...
متن کاملExtended Hückel tight-binding approach to electronic excitations.
In this work, we propose the application of a self-consistent extended Huckel tight-binding (EHTB) method in the computation of the absorption optical spectrum of molecules within the linear response time dependent density functional formalism. The EHTB approach is presented as an approximation to the Kohn-Sham energy functional. The method is applied to the computation of excitation energies a...
متن کاملLong range Debye-Hückel correction for computation of grid-based electrostatic forces between biomacromolecules
BACKGROUND Brownian dynamics (BD) simulations can be used to study very large molecular systems, such as models of the intracellular environment, using atomic-detail structures. Such simulations require strategies to contain the computational costs, especially for the computation of interaction forces and energies. A common approach is to compute interaction forces between macromolecules by pre...
متن کاملOrbital magnetization in extended systems.
While the orbital magnetic dipole moment of any finite sample is well-defined, it becomes ill-defined in the thermodynamic limit as a result of the unboundedness of the position operator. Effects due to surface currents and to bulk magnetization are not easily disentangled. The corresponding electrical problem, where surface charges and bulk polarization appear as entangled, was solved about a ...
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ژورنال
عنوان ژورنال: Journal of the Chilean Chemical Society
سال: 2003
ISSN: 0717-9707
DOI: 10.4067/s0717-97072003000400017